lrgasp-submissions

LRGASP Guidelines and Tools

Documentation and software for submitting to the Long Read Genome Annotation Assessment Project (LRGASP).

Current documentation is published at LRGASP Guidelines and Tools.

Synapse challenge is at Synapse LRGASP

Github repository is at LRGASP/lrgasp-submissions.

Additional description of LRGASP, challenges, and challenge evaluation can be found at our Stage 1 Registered Report

LRGASP Submission deadline extended: October 8, 2021, 11:59PM PT

Documentation

• Challenges
• FAQ: Frequently asked questions
• Known issues
• LRGASP data
  • Reference genomes and transcripts
  • Simulated data description
  • RNA-Seq data matrix
  • RNA-Seq data matrix TSV
  • Adapters and other data
• Self-evaluation
• Submission structure
• Submission formats:
  • Metadata
  • Metadata identifiers
  • Transcript model format
  • Read to model map format
  • Transcript expression matrix format
  • Example entries
  • Submission tools
  • Synapse submissions

Bug and feature requests

If there are questions or problems with this software, please create an issue in the LRGASP submissions GitHub tracker.

Contacts

• lrgasp-support Support list for LRGASP participants. Messages will not be shared publicly
• lrgasp-announce Subscribe to announcement list for LRGASP

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