Data matrix in is also available as:
challenges | species | sample | library_prep | platform | run_acc | replicate | biosample | sizes | file_contents | file_type | file_acc | paired_acc | file_url | paired_url |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1,2 | human | WTC11 | CapTrap | PacBio | ENCSR309IKK | 1 | ENCBS944CBA | reads | fastq | ENCFF105WIJ | ENCODE | |||
subreads | bam | ENCFF028FCL | ENCODE | |||||||||||
2 | ENCBS593PKA | reads | fastq | ENCFF212HLP | ENCODE | |||||||||
subreads | bam | ENCFF950ANU | ENCODE | |||||||||||
3 | ENCBS474NOC | reads | fastq | ENCFF003QZT | ENCODE | |||||||||
subreads | bam | ENCFF508XUP | ENCODE | |||||||||||
1,2 | human | WTC11 | CapTrap | ONT | ENCSR054ABL | 1 | ENCBS944CBA | reads | fastq | ENCFF654SNK | ENCODE | |||
nanopore_signal | tar | ENCFF970AUV | ENCODE | |||||||||||
2 | ENCBS593PKA | reads | fastq | ENCFF934KDM | ENCODE | |||||||||
nanopore_signal | tar | ENCFF902FSA | ENCODE | |||||||||||
3 | ENCBS474NOC | reads | fastq | ENCFF104BNW | ENCODE | |||||||||
nanopore_signal | tar | ENCFF053QEQ | ENCODE | |||||||||||
1,2 | human | WTC11 | dRNA | ONT | ENCSR392BGY | 1 | ENCBS944CBA | reads | fastq | ENCFF155CFF | ENCODE | |||
nanopore_signal | tar | ENCFF146MTW | ENCODE | |||||||||||
2 | ENCBS593PKA | reads | fastq | ENCFF771DIX | ENCODE | |||||||||
nanopore_signal | tar | ENCFF389XGB | ENCODE | |||||||||||
3 | ENCBS474NOC | reads | fastq | ENCFF600LIU | ENCODE | |||||||||
nanopore_signal | tar | ENCFF591QYR | ENCODE | |||||||||||
1,2 | human | WTC11 | R2C2 | ONT | ENCSR259DBL | 1 | ENCBS944CBA | 2000-10000 | reads | fasta | ENCFF153SIE | ENCODE | ||
R2C2_subreads | fastq | ENCFF178BYM | ENCODE | |||||||||||
2 | ENCBS593PKA | 2000-10000 | reads | fasta | ENCFF377IEH | ENCODE | ||||||||
R2C2_subreads | fastq | ENCFF063ASB | ENCODE | |||||||||||
3 | ENCBS474NOC | 2000-10000 | reads | fasta | ENCFF489PQQ | ENCODE | ||||||||
R2C2_subreads | fastq | ENCFF408XXR | ENCODE | |||||||||||
1,2 | human | WTC11 | R2C2 | ONT | ENCSR925UQZ | 1 | ENCBS944CBA | reads | fasta | ENCFF089IVT | ENCODE | |||
R2C2_subreads | fastq | ENCFF542VPN | ENCODE | |||||||||||
2 | ENCBS593PKA | reads | fasta | ENCFF548RZB | ENCODE | |||||||||
R2C2_subreads | fastq | ENCFF679LUJ | ENCODE | |||||||||||
3 | ENCBS474NOC | reads | fasta | ENCFF997UNC | ENCODE | |||||||||
R2C2_subreads | fastq | ENCFF357UQD | ENCODE | |||||||||||
1,2 | human | WTC11 | cDNA | Illumina | ENCSR673UKZ | 1 | ENCBS944CBA | reads | fastq | ENCFF766OAK | ENCFF644AQW | ENCODE | ENCODE | |
2 | ENCBS593PKA | reads | fastq | ENCFF198RQU | ENCFF620HBM | ENCODE | ENCODE | |||||||
3 | ENCBS474NOC | reads | fastq | ENCFF247XJT | ENCFF785SWH | ENCODE | ENCODE | |||||||
1,2 | human | WTC11 | cDNA | PacBio | ENCSR507JOF | 1 | ENCBS944CBA | reads | fastq | ENCFF563QZR | ENCODE | |||
subreads | bam | ENCFF112MRR | ENCODE | |||||||||||
ENCFF338WQL | ENCODE | |||||||||||||
ENCFF992WSK | ENCODE | |||||||||||||
2 | ENCBS593PKA | reads | fastq | ENCFF370NFS | ENCODE | |||||||||
subreads | bam | ENCFF122GKS | ENCODE | |||||||||||
ENCFF455RXJ | ENCODE | |||||||||||||
ENCFF875XMU | ENCODE | |||||||||||||
3 | ENCBS474NOC | reads | fastq | ENCFF245IPA | ENCODE | |||||||||
subreads | bam | ENCFF434SWA | ENCODE | |||||||||||
ENCFF620NFT | ENCODE | |||||||||||||
ENCFF962OWJ | ENCODE | |||||||||||||
1,2 | human | WTC11 | cDNA | ONT | ENCSR539ZXJ | 1 | ENCBS944CBA | 600-5000 | reads | fastq | ENCFF263YFG | ENCODE | ||
nanopore_signal | tar | ENCFF585AMS | ENCODE | |||||||||||
2 | ENCBS593PKA | 600-5000 | reads | fastq | ENCFF023EXJ | ENCODE | ||||||||
nanopore_signal | tar | ENCFF737GVV | ENCODE | |||||||||||
3 | ENCBS474NOC | 600-5000 | reads | fastq | ENCFF961HLO | ENCODE | ||||||||
nanopore_signal | tar | ENCFF510ABH | ENCODE | |||||||||||
1,2 | human | H1_mix | CapTrap | PacBio | ENCSR743SKO | 1 | ENCBS464AKI,ENCBS664DSZ | reads | fastq | ENCFF705IEA | ENCODE | |||
subreads | bam | ENCFF073YYF | ENCODE | |||||||||||
2 | ENCBS012DYC,ENCBS872CFG | reads | fastq | ENCFF885YGF | ENCODE | |||||||||
subreads | bam | ENCFF509GUL | ENCODE | |||||||||||
3 | ENCBS667PZC,ENCBS971DDS | reads | fastq | ENCFF822IZD | ENCODE | |||||||||
subreads | bam | ENCFF499AVA | ENCODE | |||||||||||
1,2 | human | H1_mix | CapTrap | ONT | ENCSR364OLS | 1 | ENCBS464AKI,ENCBS664DSZ | reads | fastq | ENCFF716HXZ | ENCODE | |||
nanopore_signal | tar | ENCFF797VHT | ENCODE | |||||||||||
2 | ENCBS012DYC,ENCBS872CFG | reads | fastq | ENCFF595GFC | ENCODE | |||||||||
nanopore_signal | tar | ENCFF571LYR | ENCODE | |||||||||||
3 | ENCBS667PZC,ENCBS971DDS | reads | fastq | ENCFF072FJA | ENCODE | |||||||||
nanopore_signal | tar | ENCFF317BHX | ENCODE | |||||||||||
1,2 | human | H1_mix | dRNA | ONT | ENCSR967FTZ | 1 | ENCBS464AKI,ENCBS664DSZ | reads | fastq | ENCFF854BEI | ENCODE | |||
nanopore_signal | tar | ENCFF120DLZ | ENCODE | |||||||||||
2 | ENCBS012DYC,ENCBS872CFG | reads | fastq | ENCFF804BPC | ENCODE | |||||||||
nanopore_signal | tar | ENCFF336WGD | ENCODE | |||||||||||
3 | ENCBS667PZC,ENCBS971DDS | reads | fastq | ENCFF557WRQ | ENCODE | |||||||||
nanopore_signal | tar | ENCFF316TNM | ENCODE | |||||||||||
1,2 | human | H1_mix | R2C2 | ONT | ENCSR096PNA | 1 | ENCBS464AKI,ENCBS664DSZ | 2000-10000 | reads | fasta | ENCFF947MTX | ENCODE | ||
R2C2_subreads | fastq | ENCFF438GQV | ENCODE | |||||||||||
2 | ENCBS012DYC,ENCBS872CFG | 2000-10000 | reads | fasta | ENCFF979MUK | ENCODE | ||||||||
R2C2_subreads | fastq | ENCFF433QSW | ENCODE | |||||||||||
3 | ENCBS667PZC,ENCBS971DDS | 2000-10000 | reads | fasta | ENCFF379KHH | ENCODE | ||||||||
R2C2_subreads | fastq | ENCFF348EXF | ENCODE | |||||||||||
1,2 | human | H1_mix | R2C2 | ONT | ENCSR472FCO | 1 | ENCBS464AKI,ENCBS664DSZ | reads | fasta | ENCFF672BIU | ENCODE | |||
R2C2_subreads | fastq | ENCFF918TKZ | ENCODE | |||||||||||
2 | ENCBS012DYC,ENCBS872CFG | reads | fasta | ENCFF092GJH | ENCODE | |||||||||
R2C2_subreads | fastq | ENCFF923NYH | ENCODE | |||||||||||
3 | ENCBS667PZC,ENCBS971DDS | reads | fasta | ENCFF694JLN | ENCODE | |||||||||
R2C2_subreads | fastq | ENCFF894DPZ | ENCODE | |||||||||||
1,2 | human | H1_mix | cDNA | Illumina | ENCSR154RVC | 1 | ENCBS464AKI,ENCBS664DSZ | reads | fastq | ENCFF201EVI | ENCFF591ISP | ENCODE | ENCODE | |
2 | ENCBS012DYC,ENCBS872CFG | reads | fastq | ENCFF221SLD | ENCFF223VFL | ENCODE | ENCODE | |||||||
3 | ENCBS667PZC,ENCBS971DDS | reads | fastq | ENCFF145IIO | ENCFF597GZT | ENCODE | ENCODE | |||||||
ENCFF701OIK | ENCFF139HIY | ENCODE | ENCODE | |||||||||||
1,2 | human | H1_mix | cDNA | PacBio | ENCSR731MFY | 1 | ENCBS464AKI,ENCBS664DSZ | reads | fastq | ENCFF525JUC | ENCODE | |||
subreads | bam | ENCFF413ZWA | ENCODE | |||||||||||
ENCFF735HPE | ENCODE | |||||||||||||
2 | ENCBS012DYC,ENCBS872CFG | reads | fastq | ENCFF743MYM | ENCODE | |||||||||
subreads | bam | ENCFF205WPS | ENCODE | |||||||||||
ENCFF945KEK | ENCODE | |||||||||||||
3 | ENCBS667PZC,ENCBS971DDS | reads | fastq | ENCFF372YUA | ENCODE | |||||||||
subreads | bam | ENCFF539DBI | ENCODE | |||||||||||
ENCFF736JMP | ENCODE | |||||||||||||
1,2 | human | H1_mix | cDNA | ONT | ENCSR957QYS | 1 | ENCBS464AKI,ENCBS664DSZ | 600-5000 | reads | fastq | ENCFF082OHO | ENCODE | ||
nanopore_signal | tar | ENCFF741ZFV | ENCODE | |||||||||||
2 | ENCBS012DYC,ENCBS872CFG | 600-5000 | reads | fastq | ENCFF304JRO | ENCODE | ||||||||
nanopore_signal | tar | ENCFF506RNI | ENCODE | |||||||||||
3 | ENCBS667PZC,ENCBS971DDS | 600-5000 | reads | fastq | ENCFF389YOZ | ENCODE | ||||||||
nanopore_signal | tar | ENCFF013SGT | ENCODE | |||||||||||
1,2 | human | human_simulation | cDNA | Illumina | syn25683372 | 1 | hs_illumina_sim | reads | fastq | syn25683372 | syn25683373 | human.Illumina.simulated_1.fq.gz | human.Illumina.simulated_2.fq.gz | |
1,2 | human | human_simulation | cDNA | PacBio | syn25683376 | 1 | hs_pb_sim | reads | fasta | syn25683376 | human.PacBio.simulated.fasta.gz | |||
1,2 | human | human_simulation | cDNA | ONT | syn25683375 | 1 | hs_ont_sim | reads | fastq | syn25683375 | human.ONT.simulated.fq.gz | |||
1,3 | mouse | ES | CapTrap | PacBio | ENCSR879GEQ | 1 | ENCBS648HXY | reads | fastq | ENCFF535DQA | ENCODE | |||
subreads | bam | ENCFF710FCJ | ENCODE | |||||||||||
2 | ENCBS951CRC | reads | fastq | ENCFF310IPO | ENCODE | |||||||||
subreads | bam | ENCFF062QXB | ENCODE | |||||||||||
3 | ENCBS418RDP | reads | fastq | ENCFF654JHQ | ENCODE | |||||||||
subreads | bam | ENCFF110VBJ | ENCODE | |||||||||||
1,3 | mouse | ES | CapTrap | ONT | ENCSR065QKS | 1 | ENCBS648HXY | reads | fastq | ENCFF356OJC | ENCODE | |||
nanopore_signal | tar | ENCFF670UEC | ENCODE | |||||||||||
2 | ENCBS951CRC | reads | fastq | ENCFF275RMO | ENCODE | |||||||||
nanopore_signal | tar | ENCFF942RPL | ENCODE | |||||||||||
3 | ENCBS418RDP | reads | fastq | ENCFF056EOI | ENCODE | |||||||||
nanopore_signal | tar | ENCFF861WOA | ENCODE | |||||||||||
1,3 | mouse | ES | dRNA | ONT | ENCSR369OLY | 1 | ENCBS648HXY | reads | fastq | ENCFF765AEC | ENCODE | |||
nanopore_signal | tar | ENCFF914OBQ | ENCODE | |||||||||||
2 | ENCBS951CRC | reads | fastq | ENCFF349BIN | ENCODE | |||||||||
nanopore_signal | tar | ENCFF793LSF | ENCODE | |||||||||||
3 | ENCBS418RDP | reads | fastq | ENCFF412NKJ | ENCODE | |||||||||
nanopore_signal | tar | ENCFF464USM | ENCODE | |||||||||||
1,3 | mouse | ES | R2C2 | ONT | ENCSR602SAJ | 1 | ENCBS648HXY | reads | fasta | ENCFF824JVI | ENCODE | |||
R2C2_subreads | fastq | ENCFF055REA | ENCODE | |||||||||||
2 | ENCBS951CRC | reads | fasta | ENCFF104DMI | ENCODE | |||||||||
R2C2_subreads | fastq | ENCFF598YQO | ENCODE | |||||||||||
3 | ENCBS418RDP | reads | fasta | ENCFF412UHU | ENCODE | |||||||||
R2C2_subreads | fastq | ENCFF335WMC | ENCODE | |||||||||||
1,3 | mouse | ES | R2C2 | ONT | ENCSR710TDI | 1 | ENCBS648HXY | 2000-10000 | reads | fasta | ENCFF513AEK | ENCODE | ||
R2C2_subreads | fastq | ENCFF797PJV | ENCODE | |||||||||||
2 | ENCBS951CRC | 2000-10000 | reads | fasta | ENCFF850MIB | ENCODE | ||||||||
R2C2_subreads | fastq | ENCFF742GCO | ENCODE | |||||||||||
3 | ENCBS418RDP | 2000-10000 | reads | fasta | ENCFF595TIH | ENCODE | ||||||||
R2C2_subreads | fastq | ENCFF717LLT | ENCODE | |||||||||||
1,3 | mouse | ES | cDNA | Illumina | ENCSR982PLD | 1 | ENCBS648HXY | reads | fastq | ENCFF521IDK | ENCFF006WNS | ENCODE | ENCODE | |
2 | ENCBS951CRC | reads | fastq | ENCFF089PFT | ENCFF914YPT | ENCODE | ENCODE | |||||||
3 | ENCBS418RDP | reads | fastq | ENCFF696TCH | ENCFF751FTE | ENCODE | ENCODE | |||||||
1,3 | mouse | ES | cDNA | PacBio | ENCSR172GXL | 1 | ENCBS648HXY | reads | fastq | ENCFF874VSI | ENCODE | |||
subreads | bam | ENCFF005VJA | ENCODE | |||||||||||
ENCFF564NGV | ENCODE | |||||||||||||
ENCFF714ZJR | ENCODE | |||||||||||||
2 | ENCBS951CRC | reads | fastq | ENCFF667VXS | ENCODE | |||||||||
subreads | bam | ENCFF493CBP | ENCODE | |||||||||||
ENCFF783PVA | ENCODE | |||||||||||||
ENCFF993JVA | ENCODE | |||||||||||||
3 | ENCBS418RDP | reads | fastq | ENCFF313VYZ | ENCODE | |||||||||
subreads | bam | ENCFF078IYM | ENCODE | |||||||||||
ENCFF094NZA | ENCODE | |||||||||||||
ENCFF280DWZ | ENCODE | |||||||||||||
1,3 | mouse | ES | cDNA | ONT | ENCSR198UZE | 1 | ENCBS648HXY | 500-5000 | reads | fastq | ENCFF683TBO | ENCODE | ||
nanopore_signal | tar | ENCFF429FDN | ENCODE | |||||||||||
2 | ENCBS951CRC | 500-5000 | reads | fastq | ENCFF232YSU | ENCODE | ||||||||
nanopore_signal | tar | ENCFF209ZZU | ENCODE | |||||||||||
3 | ENCBS418RDP | 500-5000 | reads | fastq | ENCFF288PBL | ENCODE | ||||||||
nanopore_signal | tar | ENCFF931ICQ | ENCODE | |||||||||||
1,2 | mouse | mouse_simulation | dRNA | ONT | syn25683380 | 1 | mm_ont_sim | reads | fastq | syn25683380 | mouse.ONT.simulated.fq.gz | |||
1,2 | mouse | mouse_simulation | cDNA | Illumina | syn25683378 | 1 | mm_illumina_sim | reads | fastq | syn25683378 | syn25683379 | mouse.Illumina.simulated_1.fq.gz | mouse.Illumina.simulated_2.fq.gz | |
1,2 | mouse | mouse_simulation | cDNA | PacBio | syn25683381 | 1 | mm_pb_sim | reads | fasta | syn25683381 | mouse.PacBio.simulated.fasta.gz | |||
2 | human | H1 | CapTrap | PacBio | ENCSR319VGI | 1 | ENCBS664DSZ | reads | fastq | ENCFF143ICB | ENCODE | |||
subreads | bam | ENCFF129SON | ENCODE | |||||||||||
2 | ENCBS872CFG | reads | fastq | ENCFF684YOO | ENCODE | |||||||||
subreads | bam | ENCFF247GLM | ENCODE | |||||||||||
3 | ENCBS667PZC | reads | fastq | ENCFF339FMQ | ENCODE | |||||||||
subreads | bam | ENCFF471ANC | ENCODE | |||||||||||
2 | human | H1 | CapTrap | ONT | ENCSR522NAJ | 1 | ENCBS664DSZ | reads | fastq | ENCFF661WLV | ENCODE | |||
nanopore_signal | tar | ENCFF841NHP | ENCODE | |||||||||||
2 | ENCBS872CFG | reads | fastq | ENCFF089AMF | ENCODE | |||||||||
nanopore_signal | tar | ENCFF988IPM | ENCODE | |||||||||||
3 | ENCBS667PZC | reads | fastq | ENCFF085EVG | ENCODE | |||||||||
nanopore_signal | tar | ENCFF571RQW | ENCODE | |||||||||||
2 | human | H1 | dRNA | ONT | ENCSR049AYR | 1 | ENCBS664DSZ | reads | fastq | ENCFF207KVO | ENCODE | |||
nanopore_signal | tar | ENCFF415NBL | ENCODE | |||||||||||
2 | ENCBS872CFG | reads | fastq | ENCFF373LMV | ENCODE | |||||||||
nanopore_signal | tar | ENCFF556RML | ENCODE | |||||||||||
3 | ENCBS667PZC | reads | fastq | ENCFF846RID | ENCODE | |||||||||
nanopore_signal | tar | ENCFF329ERA | ENCODE | |||||||||||
2 | human | H1 | R2C2 | ONT | ENCSR254DEM | 1 | ENCBS664DSZ | reads | fasta | ENCFF142IYH | ENCODE | |||
R2C2_subreads | fastq | ENCFF367JPM | ENCODE | |||||||||||
2 | ENCBS872CFG | reads | fasta | ENCFF121GFY | ENCODE | |||||||||
R2C2_subreads | fastq | ENCFF095SQG | ENCODE | |||||||||||
3 | ENCBS667PZC | reads | fasta | ENCFF878WTP | ENCODE | |||||||||
R2C2_subreads | fastq | ENCFF531FUR | ENCODE | |||||||||||
2 | human | H1 | R2C2 | ONT | ENCSR339KRF | 1 | ENCBS664DSZ | 2000-10000 | reads | fasta | ENCFF776SFO | ENCODE | ||
R2C2_subreads | fastq | ENCFF337GCH | ENCODE | |||||||||||
2 | ENCBS872CFG | 2000-10000 | reads | fasta | ENCFF561YYK | ENCODE | ||||||||
R2C2_subreads | fastq | ENCFF243MUU | ENCODE | |||||||||||
3 | ENCBS667PZC | 2000-10000 | reads | fasta | ENCFF750QSC | ENCODE | ||||||||
R2C2_subreads | fastq | ENCFF387KPE | ENCODE | |||||||||||
2 | human | H1 | cDNA | Illumina | ENCSR588EJX | 1 | ENCBS664DSZ | reads | fastq | ENCFF892WVN | ENCFF481BLH | ENCODE | ENCODE | |
2 | ENCBS872CFG | reads | fastq | ENCFF980IUG | ENCFF545DTW | ENCODE | ENCODE | |||||||
3 | ENCBS667PZC | reads | fastq | ENCFF092JRM | ENCFF441VMT | ENCODE | ENCODE | |||||||
2 | human | H1 | cDNA | PacBio | ENCSR271KEJ | 1 | ENCBS664DSZ | reads | fastq | ENCFF853OFP | ENCODE | |||
subreads | bam | ENCFF047IVP | ENCODE | |||||||||||
2 | ENCBS872CFG | reads | fastq | ENCFF400BQQ | ENCODE | |||||||||
subreads | bam | ENCFF218LEO | ENCODE | |||||||||||
3 | ENCBS667PZC | reads | fastq | ENCFF436GKZ | ENCODE | |||||||||
subreads | bam | ENCFF253NIN | ENCODE | |||||||||||
2 | human | H1 | cDNA | ONT | ENCSR016IKV | 1 | ENCBS664DSZ | 600-5000 | reads | fastq | ENCFF326IBB | ENCODE | ||
nanopore_signal | tar | ENCFF273YSV | ENCODE | |||||||||||
2 | ENCBS872CFG | 600-5000 | reads | fastq | ENCFF714YOZ | ENCODE | ||||||||
nanopore_signal | tar | ENCFF496LCG | ENCODE | |||||||||||
3 | ENCBS667PZC | 600-5000 | reads | fastq | ENCFF955CIA | ENCODE | ||||||||
nanopore_signal | tar | ENCFF749ORQ | ENCODE | |||||||||||
2 | human | endodermal | CapTrap | PacBio | ENCSR972ABM | 1 | ENCBS464AKI | reads | fastq | ENCFF054KCY | ENCODE | |||
subreads | bam | ENCFF772AJK | ENCODE | |||||||||||
2 | ENCBS012DYC | reads | fastq | ENCFF761BFK | ENCODE | |||||||||
subreads | bam | ENCFF939OZC | ENCODE | |||||||||||
3 | ENCBS971DDS | reads | fastq | ENCFF296KQK | ENCODE | |||||||||
subreads | bam | ENCFF814OQN | ENCODE | |||||||||||
2 | human | endodermal | CapTrap | ONT | ENCSR543ORO | 1 | ENCBS464AKI | reads | fastq | ENCFF626JLU | ENCODE | |||
nanopore_signal | tar | ENCFF725RKD | ENCODE | |||||||||||
2 | ENCBS012DYC | reads | fastq | ENCFF933LQH | ENCODE | |||||||||
nanopore_signal | tar | ENCFF094UMT | ENCODE | |||||||||||
3 | ENCBS971DDS | reads | fastq | ENCFF430MWW | ENCODE | |||||||||
nanopore_signal | tar | ENCFF083YSL | ENCODE | |||||||||||
2 | human | endodermal | dRNA | ONT | ENCSR758ABF | 1 | ENCBS464AKI | reads | fastq | ENCFF965CGM | ENCODE | |||
nanopore_signal | tar | ENCFF199USF | ENCODE | |||||||||||
2 | ENCBS012DYC | reads | fastq | ENCFF008HMY | ENCODE | |||||||||
nanopore_signal | tar | ENCFF760CAB | ENCODE | |||||||||||
3 | ENCBS971DDS | reads | fastq | ENCFF937WUA | ENCODE | |||||||||
nanopore_signal | tar | ENCFF248HSJ | ENCODE | |||||||||||
2 | human | endodermal | R2C2 | ONT | ENCSR874XXM | 1 | ENCBS464AKI | 2000-10000 | reads | fasta | ENCFF736LFA | ENCODE | ||
R2C2_subreads | fastq | ENCFF605OXP | ENCODE | |||||||||||
2 | ENCBS012DYC | 2000-10000 | reads | fasta | ENCFF216EPA | ENCODE | ||||||||
R2C2_subreads | fastq | ENCFF988MFC | ENCODE | |||||||||||
3 | ENCBS971DDS | 2000-10000 | reads | fasta | ENCFF143JBA | ENCODE | ||||||||
R2C2_subreads | fastq | ENCFF498ZHI | ENCODE | |||||||||||
2 | human | endodermal | R2C2 | ONT | ENCSR909KUO | 1 | ENCBS464AKI | reads | fasta | ENCFF724JLB | ENCODE | |||
R2C2_subreads | fastq | ENCFF930WML | ENCODE | |||||||||||
2 | ENCBS012DYC | reads | fasta | ENCFF818YZR | ENCODE | |||||||||
R2C2_subreads | fastq | ENCFF083OEF | ENCODE | |||||||||||
3 | ENCBS971DDS | reads | fasta | ENCFF884GOA | ENCODE | |||||||||
R2C2_subreads | fastq | ENCFF887KHY | ENCODE | |||||||||||
2 | human | endodermal | cDNA | Illumina | ENCSR266XAJ | 1 | ENCBS464AKI | reads | fastq | ENCFF783SRR | ENCFF451LZF | ENCODE | ENCODE | |
2 | ENCBS012DYC | reads | fastq | ENCFF498FDF | ENCFF181VTP | ENCODE | ENCODE | |||||||
3 | ENCBS971DDS | reads | fastq | ENCFF962ARN | ENCFF767RMY | ENCODE | ENCODE | |||||||
2 | human | endodermal | cDNA | PacBio | ENCSR127HKN | 1 | ENCBS464AKI | reads | fastq | ENCFF712CBL | ENCODE | |||
subreads | bam | ENCFF754EPN | ENCODE | |||||||||||
2 | ENCBS012DYC | reads | fastq | ENCFF731HST | ENCODE | |||||||||
subreads | bam | ENCFF941WAF | ENCODE | |||||||||||
3 | ENCBS971DDS | reads | fastq | ENCFF235QXW | ENCODE | |||||||||
subreads | bam | ENCFF337GYI | ENCODE | |||||||||||
2 | human | endodermal | cDNA | ONT | ENCSR485VRY | 1 | ENCBS464AKI | 600-5000 | reads | fastq | ENCFF180OMN | ENCODE | ||
nanopore_signal | tar | ENCFF387THY | ENCODE | |||||||||||
2 | ENCBS012DYC | 600-5000 | reads | fastq | ENCFF754BZS | ENCODE | ||||||||
nanopore_signal | tar | ENCFF470VRP | ENCODE | |||||||||||
3 | ENCBS971DDS | 600-5000 | reads | fastq | ENCFF277PKW | ENCODE | ||||||||
nanopore_signal | tar | ENCFF385VVI | ENCODE | |||||||||||
3 | manatee | blood | cDNA | Illumina | ENCSR513JKI | 1 | ENCBS538IUC | 300-350 | reads | fastq | ENCFF646MEJ | ENCFF402UPZ | ENCODE | ENCODE |
2 | ENCBS797CKD | 300-350 | reads | fastq | ENCFF380MWG | ENCFF293HYT | ENCODE | ENCODE | ||||||
3 | ENCBS193IGY | 300-350 | reads | fastq | ENCFF195QJY | ENCFF704YKH | ENCODE | ENCODE | ||||||
4 | ENCBS621PNS | 300-350 | reads | fastq | ENCFF447NFQ | ENCFF031QKC | ENCODE | ENCODE | ||||||
5 | ENCBS416GXR | 300-350 | reads | fastq | ENCFF968KOV | ENCFF803GHI | ENCODE | ENCODE | ||||||
6 | ENCBS689ZOI | 300-350 | reads | fastq | ENCFF112OQR | ENCFF530SHH | ENCODE | ENCODE | ||||||
7 | ENCBS235LIE | 300-350 | reads | fastq | ENCFF411RUT | ENCFF029FVJ | ENCODE | ENCODE | ||||||
8 | ENCBS014III | 300-350 | reads | fastq | ENCFF970WAY | ENCFF940ZOB | ENCODE | ENCODE | ||||||
9 | ENCBS169YJA | 300-350 | reads | fastq | ENCFF382JPM | ENCFF028TCU | ENCODE | ENCODE | ||||||
3 | manatee | blood | cDNA | PacBio | ENCSR272BQI | 1 | ENCBS028XVY | reads | fastq | ENCFF835YMN | ENCODE | |||
subreads | bam | ENCFF058GPT | ENCODE | |||||||||||
ENCFF123MVQ | ENCODE | |||||||||||||
ENCFF529XIE | ENCODE | |||||||||||||
3 | manatee | blood | cDNA | PacBio | ENCSR583MLP | 1 | ENCBS028XVY | reads | fastq | ENCFF589LDN | ENCODE | |||
subreads | bam | ENCFF973PES | ENCODE | |||||||||||
3 | manatee | blood | cDNA | ONT | ENCSR703ZIY | 1 | ENCBS028XVY | reads | fastq | ENCFF629AWL | ENCODE | |||
nanopore_signal | tar | ENCFF527WMT | ENCODE | |||||||||||
3 | manatee | blood | cDNA | ONT | ENCSR941VON | 1 | ENCBS028XVY | reads | fastq | ENCFF090GGQ | ENCODE | |||
ENCFF620ASK | ENCODE | |||||||||||||
nanopore_signal | tar | ENCFF268XPT | ENCODE | |||||||||||
ENCFF691IHT | ENCODE |